31 May 2009

Glow In the Dog


A cloned beagle named Ruppy – short for Ruby Puppy – is the world's first transgenic dog. She and four other beagles all produce a fluorescent protein that glows red under ultraviolet light.

A team led by Byeong-Chun Lee of Seoul National University in South Korea created the dogs by cloning fibroblast cells that express a red fluorescent gene produced by sea anemones.

Lee and stem cell researcher Woo Suk Hwang were part of a team that created the first cloned dog, SnuppyMovie Camera, in 2005. Much of Hwang's work on human cells turned out to be fraudulent, but Snuppy was not, an investigation later concluded.

This new proof-of-principle experiment should open the door for transgenic dog models of human disease, says team member CheMyong Ko of the University of Kentucky in Lexington. "The next step for us is to generate a true disease model," he says.

However, other researchers who study domestic dogs as stand-ins for human disease are less certain that transgenic dogs will become widespread in research.

Dogs already serve as models for diseases such as narcolepsy, certain cancers and blindness. And a dog genome sequence has made the animals an even more useful model by quickening the search for disease-causing genes. Most dog genetics researchers limit their work to gene scans of DNA collected from hundreds of pet owners.


Making a glowing dog


Lee's team created Ruppy by first infecting dog fibroblast cells with a virus that inserted the fluorescent gene into a cell's nucleus. They then transferred the fibroblast's nucleus to another dog's egg cell, with its nucleus removed. After a few hours dividing in a Petri dish, researchers implanted the cloned embryo into a surrogate mother.

Starting with 344 embryos implanted into 20 dogs, Lee's team ended up with seven pregnancies. One fetus died about half way through term, while an 11-week-old puppy died of pneumonia after its mother accidentally bit its chest. Five dogs are alive, healthy and starting to spawn their own fluorescent puppies, Ko says.

Besides the low efficiency of cloning – just 1.7 per cent of embryos came to term – another challenge to creating transgenic dogs is controlling where in the nuclear DNA a foreign gene lands. Lee's team used a retrovirus to transfer the fluorescent gene to dog fibroblast cells, but they could not control where the virus inserted the gene.

This would seem to prevent researchers from making dog "knockouts" lacking a specific gene or engineering dogs that produce mutant forms of a gene. These knockout procedures are now commonly done in mice and rats, and three researchers earned a Nobel prize in 2007 for developing this method, called "gene targeting".

Source: New Scientist

Hasitha Karunaratne 42004820 Mon P2

29 May 2009

Monkeys Glow to Help Study Human Diseases


Japanese researchers have bred genetically modified monkeys using a fluorescent jellyfish gene to tranform marmosets into a line of monkeys whose skin and fur glows in the dark. Researchers think this strange breakthrough could help study a range of infectious diseases, immunology and even neurological disorders affecting humans.

"The birth of this transgenic marmoset baby is undoubtedly a milestone," Gerald Schatten of the University of Pittsburgh School of Medicine and a colleague wrote in a Nature commentary.

By using these new and superior laboratory models, scientists have found that this genetic modification is passed on to a monkey's offspring therefore, the monkeys could be bred with genetic changes to help study a range of human genetic diseases through generations like Muscular Dystrophy and Parkinson's Disease. These transgenic monkeys are a great achievement. Not only are they useful due to their human similarities but they are able to breed to produce new transgenic offspring rather than creating new models from scratch, saving time and money. Of course this breakthrough raises ethical issues but Dr Mark Hill from the School of Medical Sciences at the University of New South Wales says these could be addressed with strong regulations that keep pace with scientific breakthroughs.

Posted by: Lauren Hughes 42037471, Thursday P9

LINKS: Washington Post ABC

A Cancer Gene Switch For Repairing Damaged DNA


Scientist at the Medical Research Council Laboratory of Molecular Biology uncover how an important cancer gene, BRCA 1, works by increasing the accuracy with which broken DNA is repaired. The BRCA 1 gene interacts with a protein called CtIP direct DNA breaks to be repaired using another identical piece of DNA as template. Correct genetic sequence will then be restored without mistake, thereby reducing the chance of introducing harmful mutations.

Cancer is caused by alteration in the sequence of DNA. These mutations frequently arise when DNA becomes damaged, for example, through the generation of DNA breaks. Sometimes this damage is repaired accurately to restore the original DNA sequence and other times it is repaired inaccurately to produce a mutation. BRCA1 and CtIP jointly act on broken ends to enable the reconstitution of one strand of a DNA helix to generate a region of single-stranded DNA. The generation of this single stranded DNA tail, which becomes the template for repair, is a critical step in the initiation of accurate DNA repair.


The levels of accurate DNA repair are believed to increase by promoting the interaction of BRCA 1 with CtIP. Thus, it will reduce the frequency of cancer causing mutations.
Anonymous, n.d.A Cancer Gene Switch For Repairing Damaged DNA. Medical Research Council.viewed 28 May 2009. http://www.medicalnewstoday.com/articles/151422.php

28 May 2009

Canine Olfactory Receptor Gene Polymorphism and Its Relation to Odour Detection Performance by Sniffer Dogs

Canine olfactory are well adapted for detecting a vast number of odorous substances varying in shape and size. Odour discrimination is made possible when odorants activate olfactory receptors (OR) on the olfactory neuron for further signal transduction to the brain.

A study was carried out to derive the link between polymorphism exhibited by the transmembrane domain loops of the G-protein coupled OR, and accuracy of odour discrimination protein in sniffer dogs. There were three main findings from the study. Firstly, it was discovered that a Guanine to Adenine transition at Position 592 in the cOR9S13 Gene had substituted alanine to threonine at position 198 in the EC2 receptor structure. This improved the receptor-binding affinity of some odorous molecules, improving scent detection skills of the dogs. Secondly, hypothetical polymorphic sites in 2 OR genes were expected to play a role in the effectiveness of odour discrimination. Thirdly, polymorphisms which showed significant influence on the dogs’ detecting abilities were not located in the binding pocket of chosen OR. This suggests that an alteration in other parts of the receptor structure may alter odour detection ability.

It was concluded that the influence of polymorphic sites in detecting different substance will require further study as the performance of sniffer dogs can also be explained by other environmental, behavioural, and genetic factors.

Posted by:
41832240
Links
http://proquest.umi.com.ezproxy.library.uq.edu.au/pqdlink?index=1&did=1532046401&SrchMode=3&sid=1&Fmt=2&VInst=PROD&VType=PQD&RQT=309&VName=PQD&TS=1243515355&clientId=20806&aid=2
References
Lesniak, A., Walczak,M., Jezierski,T., Sacharczuk,M., Gawkowski,M., & Jaszczak,K, (2008) ‘Canine Olfactory Receptor Gene Polymorphism and its Relation to Odour Detection Performance by Sniffer Dogs’, Journal of Heredity, 99(5), 518-527

Gene GIGYF2 Might be the Cause of Parkinson's

Research done by Robert J. Smith, M.D., director of the division of endocrinology and the Hallett Centre for Diabetes and Endocrinology at Rhode Island Hospital and professor of medicine at Alpert Medical School show that mutation of gene GIGYF2 has direct relationship with the degenerative disease known as Parkinson’s. Parkinson’s occurs when certain nerve cell that control muscle of body and movement die or impaired and affecting people above age 60. Parkinson’s also found to have possible relationship with insulin-like growth factor (IGF).

Research done towards 249 people with Parkinson’s found that 12 people has seven different forms of gene GIGYF2 mutation occurring in their cell. This research also sampled their family and found the same mutation on them. This research which also found that there is no mutation occurs in 200 healthy controls. Smith said that this discovery might give hint to the treatment and prevention of Parkinson’s.

 

Grimes, JC 2008, New Research Provides Genetic Clue to Parkinson’s Disease, Medical News Today, view on 29 March 2009,<http://www.medicalnewstoday.com/articles/101279.php>.

 

Glowing monkeys 'to aid research'



By Jason Palmer
Science and technology reporter, BBC News

Glowing marmoset feet (Nature)
The marmosets glow an eerie green under UV light

Genetically modified primates that glow green and pass the trait on to their offspring co
uld aid the fight against human disease.

Though primates that make a glowing protein have been created before, these are the first to keep the change in their bloodlines.

Future modifications could lead to treatments for a range of diseases.


The "transgenic" marmosets, created by a Japanese team, have been described in the journal Nature.

The work raises a number of ethical questions about deliberately exposing a bloodline of animals to such diseases.

Scientists have managed to modify the genes of many living organisms in recent years, ranging from bacteria to mice.

Mice have been particularly useful experimental models for studying a wide range of human diseases as modified genes are passed on from parents to progeny.

However, mice are not useful for some human diseases because they are not sufficiently similar to produce effects that are meaningful to human disease. Studies of mice with Alzheimer's disease, for example, were stymied simply because their brains were too small to scan at sufficient resolution.

link : http://news.bbc.co.uk/2/hi/science/nature/8070252.stm

Opposites attract: How genetics influences humans to choose their partners



When it comes to choosing a mate, opposites really do attract, according to a Brazilian study that found people are subconsciously more likely to choose a partner whose genetic make-up is different to their own. They found evidence that married couples are more likely to have genetic differences in a DNA region governing the immune system than were randomly matched pairs.

Scientists said it was not clear what signals attract the body to people who are genetically dissimilar to themselves, but suggested body odor or even face structure could play a role. Many researchers have found evidence that animals are attracted to members of the opposite sex with differences in major histocompatibility complex or MHC, an immune system factor that also plays a role in having healthy offspring.The MHC is a large genetic region situated on chromosome 6, and found in most vertebrates. It plays an important role in the immune system and also in reproductive success. Apart from being a large region, it is also an extraordinarily diverse one.

The team compared genetic data from 90 married couples with data from 152 randomly generated control couples. They found the real couples had significantly more dissimilarities in MHC.

"Parents with dissimilar (genetic regions) could provide their offspring with a better chance to ward infections off because their immune system genes are more diverse," they wrote in a summary preparation.

Previous studies have suggested animals may use body odor as a guide to identify possible mates as being genetically similar or dissimilar, she added, but other physical factors may also be involved.

Posted by:
41870019

Link: http://www.sciencedaily.com/releases/2009/05/090525105435.htmLink

Tiny fish cure motor nurone disease

Scottish researchers have found that zebrafish whici is a tiny tropical fish would have the key to curing motor neurone disease and forms of paralysis.

Zebrafish is able to produce new motor neurones when their spinal cord is damaged.
The ability that could reverse motor neurone disease if replicated in humans.

27 May 2009

Gene Therapy For Blindness


ScienceDaily (Sep. 9, 2008) — All three people who received gene therapy at the University of Florida to treat a rare, incurable form of blindness have regained some of their vision, according to a paper published online today in Human Gene Therapy.

The patients — one woman and two men ranging from 21 to 24 years old with a type of hereditary blindness called Leber congenital amaurosis type 2 — volunteered to test the safety of an experimental gene-transfer technique in a phase 1 clinical research study conducted by UF and the University of Pennsylvania with support from the National Eye Institute of the National Institutes of Health.

In this form of LCA disease, photoreceptor cells cannot respond to light because a gene called RPE65 does not properly produce a protein necessary for healthy vision. In the study, researchers used an adeno-associated virus — an apparently harmless virus that already exists in most people — to deliver RPE65 to a small area of the retina.

Not only were there no ill effects other than routine postsurgical soreness, the subjects said the vision in their treated eyes was slightly improved in dim lighting conditions.

"The patients report seeing brighter areas and perhaps some images, but basically the message is that this is treatment is fully safe," said William W. Hauswirth, Ph.D., a professor of ophthalmology and member of UF's Powell Gene Therapy Center and the UF Genetics Institute.

"One thing we did not do is suppress the patients' immune systems, which was done in two other LCA clinical trials that were under way," said Hauswirth, who began studying the adeno-associated virus as a vehicle to deliver genes into living animals more than 30 years ago. "Theoretically, the idea was that it might be necessary to suppress the immune system because we are using a vector that might activate the body's defenses and cause a harmful response. However, immune suppression itself carries a risk of infections and other problems. Clearly we have shown there is no need to do that in this case."

Samuel G. Jacobson, M.D., Ph.D., a professor of ophthalmology with the Scheie Eye Institute at the University of Pennsylvania, is the study's principal investigator.

"This groundbreaking gene therapy trial builds on 15 years of research sponsored by the National Eye Institute of NIH," said Paul A. Sieving, M.D., Ph.D., director of the NEI. "The study has partially restored vision in three young adults, and it demonstrates that gene therapy can be effective in treating human vision disease. Many human diseases are inherited in families and result from mutations in single genes. These genetic conditions are particularly suited to potential treatment by gene therapy. This trial to treat vision loss from the condition of Leber congenital amaurosis is an important demonstration of proof of principle and shows that we are on the right track. We can now invest in further work to refine, and ultimately to expand, genetic treatment approaches."

Results published today focus on the health of the entire retina, not just the tiny portion that received the gene therapy. A detailed examination of the therapy's effectiveness in the treated portion of the eye will appear in an upcoming issue of the Proceedings of the National Academy of Sciences. Two other recent LCA clinical trial reports appeared recently in The New England Journal of Medicine.

"The safety study itself is a milestone, but when we see a benefit to the subject — that is a truly a welcome bonus," said Barry J. Byrne, M.D., Ph.D., a professor of molecular genetics and microbiology and director of UF's Powell Gene Therapy Center, which manufactured the viral vectors used in the study. "Improvements in someone's medical condition are ultimately what we are after."

LCA2 affects about 2,000 people in the United States and is one of several incurable forms of blindness collectively known as retinitis pigmentosa, which in turn affects about 200,000 Americans.

Children with LCA2 experience major visual disability that can lead to total vision loss in adulthood. Although vision loss is severe, the structure of the retina — including its connection to the brain — can remain relatively intact for decades before the photoreceptor cells degenerate.

Study researchers from the University of Pennsylvania also include Artur V. Cideciyan, Ph.D., Tomas S. Aleman, M.D., Sharon B. Schwartz, Ph.D., and Lili Wang, Ph.D.

Shalesh Kaushal, M.D., Ph.D., Thomas J. Conlon, Ph.D., and Sanford L. Boye, M.S., from UF, and former UF Pediatrics Department Chairman Terence Flotte, M.D., now with the University of Massachusetts Medical School, also contributed to the research study.

Byrne, Hauswirth and UF have interest in a company that explores the use of therapies using the adeno-associated virus. UF, Penn and Cornell University hold a patent on gene therapy technology.

Posted by 41984019
link: http://www.sciencedaily.com/releases/2008/09/080908185316.htm

New Hypertension Genes Identified


Hypertension increases the risk of many conditions such as stroke, heart attack and kidney failure and other things. It affects approximately 30% of all people and contributes to millions of deaths each year across the world. As such, it is the focus of many studies aiming to get a better understanding of the genes which contribute to it.


Researchers at the Johns Hopkins University School of Medicine, along with an international team of collaborators studied the differences in the genomes of 30 000 people from European descent who had average to high blood pressure (from 118 over 72 to 143 over 83). There were eleven genetic differences which were found to have a correlation with high blood pressure. Surprisingly, none of them were found to be part of the system currently targeted by medication to limit blood pressure.


Each genetic difference was found to be common in the population and each has only a slight contribution to increased blood pressure. Instead it is a combination of these differences which leads to hypertension. One of these genes, ATP2B1, produces a protein which is responsible for the removal of calcium from the lining of blood vessels. Even a gene involved in immune response, SH2B3, was found to affect blood pressure.


A big issue with hypertension is that it is not a disease but rather a trait. This makes it difficult to study and treat. However, research like this goes a long way to improve the causes of high blood pressure and allow for the development of early detection systems.


original link: http://www.sciencedaily.com/releases/2009/05/090505175654.htm

26 May 2009

Drug for Alcohol Addicts


Alcohol abuse is an prominent issue in Australia – one only needs to observe the debate incited by recent events like the removal of the “alcopop” tax or the crucification of Matthew Johns. For better or for worse alcohol is a part of Australian culture and is here to stay. A newly-identified gene, humourously called 'happyhour' may provide a new method of treating alcohol addiction.

Populations of Drosophilia were exposed to alcohol and it was found that two genotypes were much less susceptible to the effects of alcohol. Both carried a mutation in the happyhour gene. When the functionality of this gene was restored, alcohol affected the flies normally.

Whilst the mechanism for this effect is not yet known, it has been shown that the gene inhibits a pathway involved in cell division and associated with cancer. Two anti-cancer drugs which act on this pathway recently received approval from the FDA. Researchers tested these drugs on flies exposed to alcohol and found that the drugs made the flies more likely to be knocked out by alcohol.

A drug which reduces the number of drinks needed to have an effect on people could potentially have a protective effect – chronic users don't have to drink excessively dangerous amounts of alcohol to “get a fix”.

Journal reference: Cell (DOI: 10.1016/j.cell.2009.03.020)

Posted by 42005377

African Genetic Diversity Revealed

Researchers from the University of Pennsylvania in Philadelphia have undertaken the largest ever genetic study of African populations. The researchers collected and analysed genetic information from 3000 people from 121 populations throughout the African continent, bring them into contact with diverse people including those such as the Pygmies of Cameroon and hunter gatherers of Tanzania. This research project posed special challenges as the scientists involved had to travel to difficult and potentially dangerous parts of Africa and were required to use very flexible resources such as make-shift labs run off car batteries.


Though this represents only a small selection (there are over 2000 different populations across Africa) the research has implied that “no single African population is representative of the diversity of the continent”. The research indicated that genetic differences paralleled differences in culture, language and lifestyle.
It also lead to the theory that the San bushmen’s home territory may be the initial starting point from where modern humans spread throughout the world.

Original article: http://www.sciencenews.org/view/generic/id/43377/title/Expansive_genetic_diversity_in_Africa_revealed

Other Links:
http://news.bbc.co.uk/2/hi/science/nature/8027269.stm
http://www.philly.com/inquirer/front_page/20090501_Genome_study_gets_insights_in_Africa.html

Posted by: 42082912

25 May 2009

Gene Therapy - Possible one-shot treatment for HIV

Currently, HIV is mainly treated with ART (antiretroviral therapies). However, this is extremely expensive and impractical to take to people's everyday life. Early this year a man in Germany reported to be "free from HIV" after a bone marrow transplant. It turns out that individuals that inherit two copies of delta32 mutation in gene CCR5 possess white blood cells that do not have a specific receptor that HIV recognizes. The bone marrow transplant was from a donor with the exact mutation needed, and after the transplant all the immune cells produced became resistant to HIV.

Scientists are now exploring the possibity of "enter gene therapy" - giving bone marrow transplant to HIV infectants. However serious challenges are still in the way, including the ethics of giving someone without cancer a bone marrow transplant. Moreover donors with two delta32 mutations are extremely rare, and with the number of patients that potentially require this therapy, there are a lot of things that need to be resolved first.

link: http://www.newscientist.com/article/mg20126964.400-gene-therapy-promises-oneshot-treatment-for-hiv.html

GENETIC TEST SAVES BABIES


Hundreds of couples are benefitting from the recent advances in molecular genetics and assisted reproductive technology. One of the recent and prominent techniques used is the pre-implantation genetic diagnosis (PGD). This technique enables physicians to identify genetic diseases in the embryo, prior to implantation, before the pregnancy is established. Thus, PGD encourages couples to have their biological babies despite having serious genetic disorders such as cystic fibrosis, Tay Sachs disease, Lesch Nyhan syndrome, Duchenne muscular dystrophy and other diseases carried on the X chromosome. Consider a woman being a carrier of chromosome rearrangement which will cause chances for her child to have chromosome abnormalities. There is chance that her babies will have severe mental and physical disabilities that will usually lead to miscarriage or death of baby not long after birth. With PGD, embryos are diagnosed three days after its fertilization by removing single cells from each embryo. The selected DNA sequence of interest from these single cells is then amplified using the PCR technique to be analysed for genetic disease. When a healthy embryo is identified, it will then be implanted back in the woman’s uterus.


PGD also helps to increase fertility rate in older women. One of the reasons older women have a poorer pregnancy rate is because their embryos are often chromosomally abnormal. With PGD technology, physicians can select embryos that are chromosomally normal and then transfer the healthy embryo to the women’s uterus. Thus, lowering miscarriages and birth defects for older mums. While PGD represents the cutting edge of reproductive technology, and gives us an idea of what may be possible for the future, it also raises a number of worries and concerns. One of it is PGD might become a child sex-selection tool that can lead to the imbalance of sex ratio of the world.

Reference:
http://www.infertilitybooks.com/onlinebooks/malpani/chapter26.html
http://www.medicalnewstoday.com/articles/124438.php

24 May 2009

Swine flu virus origins

With the number of swine flu cases in Australian rising to 14(5), global research in to the A(H1N1) virus has found that components of the swine flu virus may have been circulating undetected in pigs or other animals for an extended period of time(4).

With the sequencing of the A(H1N1) genome by the microbiology lab at the Public Health Agency of Canada1, it was discovered that the current swine flu virus consists of an assortment of genes from human, pig and avian viruses. This combination is named triple re-assortment.

A report published in the Science magazine(3) by the U.S. Centers for Disease Control and Prevention (CDC) and the University of Cambridge in the United Kingdom on May 22nd 2009, provides a detailed explanation into the probable origins of this virus.

This report states that the current H1N1 virus consists of eight gene segments. Two of these genes are from an avian virus that in 1979 infected Eurasian pigs; three from an older H1N1 virus from North American pigs; two from a separate case of triple re-assortment North American swine flu; and the final one from a human virus originally transmitted to humans by birds in 1968. All of these fragments of genes are said to have combined to form the current A(H1N1) virus. However, it is not certain whether this virus directly infected humans from pigs or whether it may have inhabited other organisms as intermediate hosts before making the jump into humans.(2, 3, 4)

The report also states that this virus has fewer genetic variations than the common seasonal human influenza viruses. Thus, allowing the development of a vaccine against possible variants of the A(H1N1) virus. (2, 3, 4)


Posted by: 42052045


References:
1. Canada sequences swine flu virus. (May 7, 2009). (Online).
Available: http://www.abc.net.au/science/articles/2009/05/07/2563273.htm?site=science&topic=latest

2. Cohen, J. (May 22, 2009). First Detailed Report of New Virus's Promiscuous
Past. (Online).
Available: http://blogs.sciencemag.org.ezproxy.library.uq.edu.au/scienceinsider/2009/05/first-detailed.html

3. Garten, R. et al. (May 22, 2009). Antigenic and Genetic Characteristics of
Swine-Origin 2009 A(H1N1) Influenza Viruses Circulating in Humans. (Online). Available: http://www.sciencemag.org.ezproxy.library.uq.edu.au/cgi/rapidpdf/1176225v1.pdf

4. Saey, T. (May 22, 2009). Genetic analysis of swine flu virus reveals diverse
parts components have existed for years but are combined in a new way. (Online). Available: http://www.sciencenews.org/view/generic/id/44068/title/Genetic_analysis_of_swine_flu_virus_reveals_diverse_parts
5. The Australian. (May 24, 2009). More swine flu cases confirmed. (Online).Available: http://www.theaustralian.news.com.au/story/0,25197,25530052-12377,00.html

The search for a HIV vaccine has proven futile thus far, largely due to the fact that HIV is so mutable. HIV changes its surface so quickly that the antibodies made by the immune system cannot keep up with the ever-changing virus.

Simian immunodeficiency virus (SIV) is an animal model that is most similar to HIV. Dr. Phillip Johnson, professor at University of Pennsylvania, found a way to protect macaques from SIV using an antibody that neutralises the virus. The antibody’s mechanism is not known, nor has it been possible to make humans produce these antibodies.

However, other viruses can be used transport gene snippets into organisms. The adeno-associated virus (AAV) is used as a vector for treating haemophilia and congenital blindness by replacing missing genes. Johnson and his team used the AAV to inject artificially engineered SIV antibodies into the muscles of 9 macaques, where the muscle cells then started to produce the antibody and release it into the bloodstream. They were then injected with SIV and their health was monitored for 1 year.

Of the 9, only 3 showed any sign of SIV, and none of these developed AIDS. The other 6 monkeys showed no sign of SIV.

Dr. Johnson is confident that the same vector-mediated gene transfer can be applied to HIV and is hopeful to begin clinical trials soon. The final medication, while still a long way off, will contain several HIV antibodies so as to attack the virus in more than one way, with the intention of destroying mutant strains simultaneously.

-Maha Jegatheesan (42051123)

References:
Technology Review by MIT http://www.technologyreview.com/biomedicine/22663/page2/

Picture: http://www.csend.hu/magazin/0102/hiv2.jpg

23 May 2009

Stem cells "seek and destroy" cancer cells



British researchers have discovered a potentially new method of delivering a cancer-killing protein to tumors, by using genetically engineered stem cells from bone marrow. Experiments conducted on mice and cell cultures showed that adult stem cells – a type known as mesenchymal stem cells- could target cancer cells and deliver the lethal protein to destroy them. This allows the stem cells to attack only the cancer and spare normal healthy tissue, unlike many present cancer treatments which destroys healthy cells.

Essentially, the researchers have combined two pieces of research. The first is that mesenchymal stem cells have an innate ability to seek out tumors throughout the body and induce apoptosis (cell death). The cells have also been altered to express or make the cancer-killing protein called TNF-related apoptosis-inducing ligand or TRAIL.

Studies in cell cultures showed the cells were able to find and kill cells from lung, squamous, breast and cervical cancer. Many types of cancer are highly sensitive to this trail protein. Mice which have been injected with breast tumors demonstrated that the TRAIL protein was able to safely kill the tumors but leave the healthy tissue intact. When they delivered the therapy, 38 percent of the tumors were completely eliminated.

The goal of the research would be to develop a cell-based cancer treatment for humans that specifically targets cancer cells.
An advantage of these cells is that they are “immunoprivileged”, meaning the body will not reject them as foreign invaders. Thus, they can be made in large quantities/batches instead of having to make custom treatments for each patient. Several more safety studies would be needed, but the team hopes human trials could begin in two or three years.

Original link: http://www.newsdaily.com/stories/tre54i76u-us-cancer-treatment/

Posted by: S4193764

22 May 2009

Genetic modification on babies by ooplasmic transfer

In the year of 2001, a group of scientists had conducted an experimental research on overcoming infertility problems. 30 babies were involved in this experiment. Out of 30 babies, 15 were the product of genetically altered germ line. These babies were born to be healthy and normal. Two one year old children were tested with mitochondrial fingerprinting. From the test, tiny quantity of additional genes was found which were not inherited from both parents. The additional gene came from a healthy donor.
By having the additional genes, the children’s germ line is altered and would be passed on to their future generation. These children were born using a method called ooplasmic transfer in which some of the mitochondria from the donor’s egg cell is taken and injected into the egg of the mother with infertility problems. The eggs are then fertilized in-vitro. The infertile mothers were believed to be suffering mitochondria defects. The mitochondria donated by the donors could function properly hence it can help to increase the chances of embryonic development. Mitochondria are commonly passed down from one generation to the next through maternal line. New born babies from ooplasmic transfer contained genes from both parents as well as the donor.
There were many ethical issues arisen due this experimental research. Regardless of these issues, this experiment was proven to be successful and it would be able to contribute to the society in the near future to help reduce infertility problems.
References
http://news.bbc.co.uk/2/hi/science/nature/1312708.stm

Gene expression meta-analysis identifies chromosomal regions involved in ovarian cancer survival

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Previous studies on the genetic causes of ovarian cancer have focused on comparing allelic imbalance in tumour and normal tissues. Thomassen et al present the first documented report using genome-wide gene expression data to investigate the chromosomal position of regions corresponding to early recurrence of ovarian cancer.


Global gene expression data from 833 ovarian cancer patients were collected. Three of the four data sets were used to identify genomic regions involved in survival. The fourth data set was used as an independent data set for validation. This study used Gene Set Enrichment Analysis to rank chromosomal regions in relation to their association with ovarian cancer survival. Over-representation analysis was used to identify loci with imbalanced expression in tumours from short-term survivors compared to long-term survivors. 1-4 consecutive cytogenic bands were identified; these corresponded to regions of increased expression, occurring at 5q12-14 and a very large region of chromosome 7 with the strongest signal at 7p15-13. Reduced expression was identified at 4q26-32, 6p12-q15, 9p21-q32, and 11p14-11. Region scores summarizing the expressional level of a certain region was calculated by Kaplan-myer plots and analyzed for their association to ovarian cancer survival. These six identified alterations all worsened prognosis in short term survivors. Thus it was deduced that each of the regions contained one or a few metastasis inducing or suppressing genes that are causal for the spreading of ovarian cancer and decreased sensitivity of tumours to treatment.


Although the exact causal genes weren’t identified, the impact of the identified regions on alterations on biological processes was investigated. Pathway analysis of expression patterns associated with high mutational region score identified upregulation of 4 growth factor pathways: epidermal growth factor (EGF), platelet-derived growth factor (PDGF), insulin-like growth factor 1 (IGF1), and Thrombopoietin. Three of these; EGF, PDGR, and IGF1 have been linked with tumourigenesis, progression, angiogenesis, metastasis and survival in solid tumours.


This study is an example of the genomic study of informational challenge number 2 with defects in the ‘readout’ of the genome in the correct order, time and amount (S Degnan, 2009). With further research, measuring DNA copy number in identified regions combined with clinical data will be important for the evaluation of the prognosis of ovarian cancer patients.


References:

Article: Thomassen Mads, Jochumsen Kirsten M, Mogensen Ole , Qihua Tan, Torben A. Kruse, (2009), Gene expression meta-analysis identifies chromosomal regions involved in ovarian cancer survival, Journal of Genes, Chromosomes and Cancer DOI:10.1002/gcc.20676

Fig: Dark stains indicating gene mutations in ovarian cancer cells. (Credit: Georgia Tech/Ovarian Cancer Institute)

Post by 42049353

"Micro Switch" Influences Expression of Nicotine Addiction Gene

For several years, scientists have tried to find genetic links to nicotine dependence. Although studies have found many genes to be associated with tobacco smoking, only small handful are actually considered causative, and these genes are difficult to identify. As denoted by the central dogma of biology, DNA encodes RNA, and RNA codes for proteins; however, it is now widely know that some types of RNA have alternate roles. One type of non-protein-coding RNA is microRNA. Named for their relatively small size, microRNA influence the extent to which genes are expressed, which in biological terms, is the rate of conversion of specific DNA to RNA.

To date, microRNA has not been shown to play a significant role in psychiatric disorders; however, a recent study published in Biological Psychiatry has made the discovery that variations in the expression of the dopamine D1 receptor gene may have a causal link to the likelihood of nicotine addiction. In a previous study, researchers at the University of Virginia, Huang and Li showed the dopamine D1 receptor gene is causatively linked with nicotine dependence (the dopamine D1 receptor is one of the major receptors in the brain that mediate the action of dopamine neurotransmitters). Huang and Li found that the two alleles of the dopamine D1 receptor gene can be expressed to different degrees. Their current study demonstrates that the variations in expression are regulated by microRNA miR-504, thus it can be said that microRNA directly influences the expression of genetic variations that predispose an individual to developing an addiction to nicotine. This finding is of interest to the scientific community because it shows how certain genes can vary their degree of expression by using a “micro switch”, that is, microRNA.

Original Article: http://www.sciencedaily.com/releases/2009/04/090423082758.htm

Posted by 42014007

Genetically Screening Dairy Herds

MTT Agrifood Research in Finland has conducted research into the impact of two genes on the protein and fat composition of milk and overall milk yield from dairy cows. Researcher Sirja Viitala screened the genome of the Finnish Ayrshire cow, from which among the several chromosomal areas that influence milk production, chromosome 20 became the most significant as the focus of the study. Viitala indentified two genes as contenders responsible for the actions of this chromosome, in particular the effect polymorphisms in them had on milk production. From the research two important discoveries were made:
· In the gene encoding growth hormone receptor, a polymorphism was found to directly determine the dry matter of milk
· In the gene encoding prolactin receptor, a polymorphism was found the protein content of milk

This revelation is not only important in mapping of the bovine genome, but screening of individuals to identify particular traits. Multiplication technology facilitates this, whereby enough material is extracted from a small sample to analyse several chromosomes. It is this process that is applied to extracting a sample from an embryo in vitro without damaging it to establish its sex and the genes affecting milk production. In this way, researchers can select those embryos carrying the desired genes to be the animals that are raised into the dairy herd via surrogates. Using genetic screening for such purposes makes breeding of the dairy herd much more economical and efficient – it eliminates both the chance of the offspring being male (which is useless), and the time taken for a female to display the quality of her milk production (phenotypic expression). Overall this contributes to a larger volume of high quality milk, without unwanted offspring, poor quality cows and hence wastage of pasture.

References:
Science Daily, 2008, Science News: Genetic Information Advances the Breeding of Dairy Cattle, [WWW Page],http://www.sciencedaily.com/releases/2008/11/081117082244.htm
Finnish Ashyre Today, n.d., [Image], www.ayrshire-finland.com/.../kuvat/kisella.jpg

21 May 2009

Super Rats Destroy Sport as We Know It.




A study at the University of Pennsylvania has found that by injecting genetically modified plasmids into the muscles of rats they were able to increase muscle mass by up to 30% when coupled with resistance training. The study also showed that muscle mass reduced at a lower rate when detrained.

The recombinant AAV plasmid (pSUB201) was used containing myosin light chain 1/3 promoter/enhancer, rat IGF-IA cDNA, and simian virus 40 polyade-nylation signal for viral production. Six hundred microlitres of 10% glycerol/PBS containing 1010 recombinant particles were injected into the rat’s flexor hallucis longus muscle (equivalent muscle in humans is the largest muscle in the calf that flexes the ankle) through an incision. The rat was allowed to recover then underwent resistance training.

This training consisted of the rats climbing a 1 metre ladder with 2cm increments at an 85° incline with weights attached to their tails. The rats were placed at the bottom of the ladder and were encouraged to climb by having their tails touched. If at any stage they refused to climb they received an electric shock to the tail. They could rest for 2 minutes at the top before having the weight increased and being placed at the bottom of the ladder.

The increased muscle growth (hypertrophy) is the result of viral expression of Insulin Growth Factor-I a result of the presence of the recombinant plasmid. IGF-I increases protein synthesis and proliferation of satellite cells thus leading to muscle growth.

The therapeutic applications of this research are very exciting in terms of rehabilitation and for the elderly. But there are concerns that it will find its way into sport and tip the scales in the war against performance enhancement.

by: Toby Kowal 41144774

http://www.msnbc.msn.com/id/4282866/

http://jap.physiology.org/ Search for article below.


Viral expression of insulin-like growth factor-I enhances muscle hypertrophy
in resistance-trained rats

Sukho Lee,1,* Elisabeth R. Barton,2,* H. Lee Sweeney,2 and Roger P. Farrar1

Department of Kinesiology, University of Texas, Austin, Texas 78712; and 2Department of Physiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 19104-6021 Submitted 7 May 2003; accepted in final form 27 October 2003

New Tool to Isolate RNA


A new tagging method has been created to isolate RNA from specific cells. This new method injects a chemically modified gene, Toxoplasma gondii and activates it in one cell type within a tissue rather than physically separating cell types. The newly generated RNA in this particular cell type is then tagged and isolated.

This new method gives scientists a more accurate idea what the cell is doing. With this method it is possible to ‘listen in’ to the messenger RNA that the nucleus is sending each cell without disturbing the cell. This is helpful for ‘listening’ to host cells before and after the initiation of a disease to determine how cells respond. For example study healthy immune cells versus bacterially-challenged immune cells.

The tool is built with the enzyme uracil phosphoribosyltransferase or UPRT, and a nucleotide salvage enzyme that prepares nucleotides into newly synthesized RNA. When the nucleotide is altered the UPRT enzyme causes the RNA to become tagged with thiouracil (TU) allowing the “TU-tagged” RNA to be purified from untagged RNA.

So far the scientists who created this new tool have tested on embryos, larvae and etc but researchers say that the method should work on other systems as well.

Original Article: http://www.sciencedaily.com/releases/2009/05/090518101910.htm

By: 42098191

20 May 2009

Cattle Genome Sequenced


The sequencing of a Cattle Genome was reported on April 23 in Science and April 24 in Genome Biology. Both a group from the University of Illinois and one from the University of Maryland have produced drafts of the bovine genome and have identified genes important for disease resistance, food digestion and milk production. This genome gives us more of an indication of how the cow’s anatomy works and has produced some surprising results. One surprise was the gene that encodes for the enzyme lysozyme which is found in a cow’s second stomach, breaking down bacteria into nutritious proteins. We have one copy of the gene but the genome sequence reveals that cows have 10 of them.

The two research teams sequenced the same segments of DNA but assembled them differently. Most DNA came from a single cow in Montana called L1 Dominette 01449 (pictured) and it is said that DNA sequences from two bulls will soon be added to the mix in order to study genes on the Y chromosome. The two selected bulls are described as “two of the most important bulls in the Holstein breed” and the genetic makeup of these bulls will give researchers and breeders valuable insight into why cows function they way they do. Knowing which genes keep a cow healthy and benefit milk production will be advantageous to farmers all over the world.

Another study reported in Science involved the use of DNA to track the changes of coat colour in horses. In the study, researchers found that horse genes corresponding to new coat colours appeared around the time of domestication. These findings demonstrate human impact on animal genomes. This area of study may very well continue as the sequencing of the cattle genome progresses.

Though the researchers working on the cattle genome are all quick to point out that these are just draft assemblies, this is still a major advance in the field of genetics and has already paved a brighter future for breeders and farmers in the cattle industry.

Reference: http://www.sciencenews.org/view/generic/id/43190/title/Cattle_genome_sequenced

Molecule of Life Created In Lab


How such complex molecules as DNA, even the simpler RNA molecule, could have spontaneously come into being in the 'primordial cooking pot' has been a subject of much confusion amongst scientists for decades. RNA consists of long chains of ribonucleotides, each of these containing a nitrogenous base, a sugar and phosphate group. Many assumed that these three components initially formed separately before coming together, but this seemed unlikely as two of the four bases did not readily bond with the sugar.

John Sutherland from the University of Manchester, UK, has worked out a new mechanism of joining these components together in order to create a synthetic RNA molecule. His team have synthesised RNA by working with 5 molecules that were thought to be present in the primordial soup, hence simulating how RNA may have first arisen. The conditions and 'recipe' used by Sutherland and his team to mix the 5 ingredients, involving a blast of UV light, created ribonucleotides by utilising a molecule that contains both the sugar and the base, rather than forcing the two molecules to unwillingly bond with each other.

This method only works however, by means of another trick - the phosphate group must be present from the very beginning, although it does not react until the end - it is used as a catalyst and a buffer to start off with. "We don't use any way-out scenarios - all the conditions are consistent with what we know about early Earth," says Sutherland.

Original Article:

http://www.newscientist.com/article/mg20227084.200-molecule-of-life-emerges-from-laboratory-slime.html

Ryan Droney (41745180)

New Approach to HIV Vaccine Using Monkey SIV Model

The traditional model for developing a HIV vaccine involves targeting the adaptive immune system by producing antibodies that neutralise a large range of HIV field isolates. Scientist Philip Johnson and his colleagues are focusing on a new approach, bypassing the adaptive immune system. An adeno-associated virus (AAV) vector is used to transfer genes expressing antibodies or immunoadhesins (antibody-like molecules) with predetermined HIV specificity into muscle. AAVs are commonly used as gene transfer vectors because they generally do not cause disease in primates nor elicit a response from the host’s immune system.

Researchers used a model similar to humans for the experiments. Macaques were infected with the simian immunodeficiency virus (SIV). The experiments were based on delivering, via the AAV vector, SIV-specific antibodies directly to muscle, where they would be endogenously synthesised in myofibers (muscle fiber) and distributed into the circulatory system, thereby protecting the macaque against the infection.

Results found that this method generated long-lasting neutralising activity in serum, with complete protection against intravenously-delivered virulent SIV. Two thirds of the infected macaques were protected against the infection, and the entire sample (nine) from AIDS, whereas all six of the control group were infected and two thirds died during the experiment. One intramuscular injection of the AAV vector is believed to direct long-term, continuous expression of the biologically active protein. The experiment also demonstrated that AAV vectors (double-stranded DNA) achieved higher levels of immunoadhesins in serum than traditionally used single-stranded DNA vectors.

The experiment demonstrated a new approach to developing an effective HIV vaccine, avoiding the adaptive immune system and using the SIV model to carry out further testing.

Article
Johnson P. R., Schnepp B. C., Zhang J., Connell M. J., Greene S. M., Yuste E., Desrosiers R. C. & Clark K. R. (May 2009). “Vector-mediated gene transfer engenders long-lived neutralizing activity and protection against SIV infection in monkeys” in Nature Medicine, Advance Online Publication (DOI 10.1038/nm.1967).

Photo
From National Geographic: Southwest National Primate Research Center at Southwest Foundation for Biomedical Research in San Antonio http://news.nationalgeographic.com/news/bigphotos/78627061.html

By Jaelle Brealey - 42016029

Antiviral activity of the TRIM5 gene


In recent studies of the TRIM5 gene scientists have observed antiretroviral properties. This ability to restrict viruses has sparked significant interest in the international science community as the TRIM5 in some primates is effective against HIV, giving hope to virologists and those working to eradicate HIV (Welkin & Sawyer, 2009).
Already the TRIM5 of a Rhesus monkey (rhTRIM5) has been used to prevent the infection of human cell lines from HIV-1. The genetic structure of the TRIM5 gene in most primates differs to humans, most notably in the ability of some monkeys to restrict HIV-1 preventing the spread of infection (something which humans are unable to achieve). South American Owl monkeys were among the primates with a resistance to HIV-1. This restriction ability was experimented with and it was determined that Owl monkeys possess coding for cyclophilin A (CypA) in the TRIM5 locus. The ability of CypA to bind to the capsid protein of HIV-1 (thereby identifying the virus) combined with the antiviral capabilities of the TRIM5 provides the Owl monkey with a defence mechanism against HIV-1 and other lentiviruses. Research is already underway using the TRIM5 gene in monkeys to enhance the ability of human cells to recognise the HIV-1 virus. So far scientists have been experimenting with altering amino acids in the Human TRIM5 protein in accordance with the structure of the Rhesus protein to increase the recognition of HIV. This small change has had positive results with improved restriction of HIV-1 (Welkin & Sawyer, 2009).
TRIM5 is always competing with viruses for supremacy and as such its evolutionary process is significantly different from other genes. Instead of a long history of purifying selection with rare instances of genetic innovation, the TRIM5 gene has evolved almost entirely by positive selection with variations in the DNA occurring as the result of various evolutionary changes from insertions and deletions to convergence and exon capture (Welkin & Sawyer, 2009).
It is hoped that the study of TRIM5 and its restriction loci will be invaluable in discovery of new antiviral factors, the identification of other gene functions and maybe even the prevention of HIV (Welkin & Sawyer, 2009).

REFERENCES
Welkin, J., & Sawyer, S. (2009). Molecular evolution of the antiretroviral TRIM5 gene. Immunogenetics , 163-176.

Modified Mosquitoes --- Our New Partner to Fight Against Malaria
A new study suggests that the genetically modified mosquitoes may be our greatest allies to create a new generation of malaria treatments. It is said that mosquitoes’ immune systems are capable of killing 80% to 90% of the malaria parasites that enter their bodies. The malaria-parasite populations are lower when they are inside mosquito bodies, therefore it may be more effective to attack malaria inside the mosquitoes before it enters human hosts.
It is important to understand the mechanism of mosquito’s immune system in fending off malaria. Researchers have already worked out the mechanism that drives one of mosquitoes’ defences. A complex can be formed from three proteins in mosquito blood. Then it binds to malaria parasites and destroys their membranes by punching holes. Due to the difficulties in putting the three proteins together, one of the feasible approaches is to create genetically modified mosquitoes, granting their immune systems carry out malaria-killing abilities. The rest of the work is to give the modified genes a selective advantage and help them quickly spread through the wild mosquitoes via breeding. Since the three-protein mechanism is not the only factor that involved in mosquitoes’ malaria-fighting abilities, this genetically modified technique is not likely to be quick or easy.The study should go on and provide a full picture for the global health crisis.
Reference: http://news.nationalgeographic.com/news/2009/04/090421-world-malaria-day.html